Index

_

__call__() (vamtoolbox.display.CursorFormatter method) (vamtoolbox.displaygrayscale.CursorFormatter method) __default_BCLP (vamtoolbox.optimize.Options attribute) __default_CAL (vamtoolbox.optimize.Options attribute) __default_FBP (vamtoolbox.optimize.Options attribute) __default_OSMO (vamtoolbox.optimize.Options attribute) __default_PM (vamtoolbox.optimize.Options attribute) __getstate__() (vamtoolbox.imagesequence.ImageSeq method) __repr__() (vamtoolbox.response.ResponseModel method) __setstate__() (vamtoolbox.imagesequence.ImageSeq method) __str__() (vamtoolbox.optimize.Options method) __version__ (in module vamtoolbox) _alpha_homo_ball() (vamtoolbox.medium.AttenuationModel method) _alpha_homo_cylinder() (vamtoolbox.medium.AttenuationModel method) _arrayInsertImage() (in module vamtoolbox.imagesequence) _compileProgram() (vamtoolbox.voxelize.ShaderProgram method) _compileShaders() (vamtoolbox.voxelize.ShaderProgram method) _convert() (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage method) _createGrid() (in module vamtoolbox.dlp.setup) _default_analytical (vamtoolbox.medium.AttenuationModel attribute) (vamtoolbox.medium.IndexModel attribute) _default_gen_log_fun (vamtoolbox.response.ResponseModel attribute) _default_interpolation (vamtoolbox.medium.AttenuationModel attribute) (vamtoolbox.medium.IndexModel attribute) (vamtoolbox.response.ResponseModel attribute) _default_linear (vamtoolbox.response.ResponseModel attribute) _dmapdf_glf() (vamtoolbox.response.ResponseModel method) _dmapdf_id() (vamtoolbox.response.ResponseModel method) _dmapdf_interp() (vamtoolbox.response.ResponseModel method) _dmapdf_lin() (vamtoolbox.response.ResponseModel method) _draw() (vamtoolbox.voxelize.OpenGLSlicer method) _drawWindow() (vamtoolbox.voxelize.OpenGLSlicer method) _dtype_to_tensor_type (vamtoolbox.projector.pyTorchRayTrace.RayState attribute) _dv_dopl() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _dv_ds() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _dv_dsigma() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _dx_dopl() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _dx_ds() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _dx_dsigma() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _ensure_string_data() (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage method) _formatPresampledScalarField() (vamtoolbox.medium.MediumModel method) _formatPresampledVectorField() (vamtoolbox.medium.MediumModel method) _forwardEuler() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

_forwardSymplecticEuler() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _get_fourier_filter() (in module vamtoolbox.util.data) _glsl_frag (vamtoolbox.voxelize.ShaderProgram attribute) _glsl_vert (vamtoolbox.voxelize.ShaderProgram attribute) _grad_n_eaton() (vamtoolbox.medium.IndexModel method) _grad_n_homo() (vamtoolbox.medium.IndexModel method) _grad_n_lune() (vamtoolbox.medium.IndexModel method) _grad_n_maxwell() (vamtoolbox.medium.IndexModel method) _insertImage() (in module vamtoolbox.imagesequence) _invertU() (in module vamtoolbox.imagesequence) _invertV() (in module vamtoolbox.imagesequence) _leapfrog_init() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _makeMasks() (vamtoolbox.voxelize.OpenGLSlicer method) _map_glf() (vamtoolbox.response.ResponseModel method) _map_id() (vamtoolbox.response.ResponseModel method) _map_interp() (vamtoolbox.response.ResponseModel method) _map_inv_glf() (vamtoolbox.response.ResponseModel method) _map_inv_id() (vamtoolbox.response.ResponseModel method) _map_inv_interp() (vamtoolbox.response.ResponseModel method) _map_inv_lin() (vamtoolbox.response.ResponseModel method) _map_lin() (vamtoolbox.response.ResponseModel method) _matvec() (vamtoolbox.projector.algebraicPropagation.AlgebraicPropagator method) _n_eaton() (vamtoolbox.medium.IndexModel method) _n_homo() (vamtoolbox.medium.IndexModel method) _n_lune() (vamtoolbox.medium.IndexModel method) _n_maxwell() (vamtoolbox.medium.IndexModel method) _no_step_init() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) _Process (class in vamtoolbox.dlp.players) _renderSlice() (vamtoolbox.voxelize.OpenGLSlicer method) _rmatvec() (vamtoolbox.projector.algebraicPropagation.AlgebraicPropagator method) _rotate() (in module vamtoolbox.imagesequence) _run() (vamtoolbox.dlp.setup.SetupWindow method) _scalar_field_interp() (vamtoolbox.medium.MediumModel method) _scaleIntensity() (in module vamtoolbox.imagesequence) _scaleSize() (in module vamtoolbox.imagesequence) _selectSino0() (vamtoolbox.projector.pyTorchRayTrace.RayState method) _selectSino1() (vamtoolbox.projector.pyTorchRayTrace.RayState method) _selectSino2() (vamtoolbox.projector.pyTorchRayTrace.RayState method) _setModelLocation() (vamtoolbox.voxelize.OpenGLSlicer method) _truncateIntensity() (in module vamtoolbox.imagesequence) _updateBounds() (vamtoolbox.voxelize.Voxelizer method) _vector_field_interp() (vamtoolbox.medium.MediumModel method) _worker() (in module vamtoolbox.dlp.players)

A

AbsorptionModel (class in vamtoolbox.medium) addColorbar() (in module vamtoolbox.util.matplotlib) addMeshes() (vamtoolbox.voxelize.Voxelizer method) AlgebraicPropagator (class in vamtoolbox.projector.algebraicPropagation) allocateRayEnergyToSinogram() (vamtoolbox.projector.pyTorchRayTrace.RayState method) allocateSinogramEnergyToRay() (vamtoolbox.projector.pyTorchRayTrace.RayState method)

ArrayInterfaceImage (class in vamtoolbox.dlp.arrayimage) astra3Dabsorption (class in vamtoolbox.projector.astra3Dabsorption) astra3Dinclined (class in vamtoolbox.projector.astra3Dinclined) astra_available (in module vamtoolbox.projector.Projector2DParallel) (in module vamtoolbox.projector.Projector3DParallel) AttenuationModel (class in vamtoolbox.medium) AxisAlignment (class in vamtoolbox.dlp.setup)

B

backProject() (vamtoolbox.projector.astra3Dabsorption.astra3Dabsorption method) (vamtoolbox.projector.astra3Dinclined.astra3Dinclined method) (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) (vamtoolbox.projector.tigre3D.tigre3D method) backward() (vamtoolbox.projector.algebraicPropagation.AlgebraicPropagator method) (vamtoolbox.projector.Projector2DParallel.Projector2DParallelAstra method) (vamtoolbox.projector.Projector2DParallel.Projector2DParallelPython method) (vamtoolbox.projector.Projector2DParallelCUDA.Projector2DParallelCUDAAstra method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelAstra method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelPython method) (vamtoolbox.projector.Projector3DParallelCUDA.Projector3DParallelCUDAAstra method) (vamtoolbox.projector.Projector3DParallelCUDA.Projector3DParallelCUDATigre method) (vamtoolbox.projector.pyTorchAlgebraicPropagation.PyTorchAlgebraicPropagator method) (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method)

BCLPNorm (class in vamtoolbox.optimizer.BCLP) begin() (vamtoolbox.voxelize.OpenGLSlicer method) BodiesIndexTracker (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) BodyMesh (class in vamtoolbox.voxelize) Bounds (class in vamtoolbox.voxelize) buildMatrix() (in module vamtoolbox.util.build_sparse_matrix) buildPropagationMatrix() (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method)

C

calcAbsorptionMask() (vamtoolbox.geometry.ProjectionGeometry method) calcCV() (in module vamtoolbox.metrics) calcIPDR() (in module vamtoolbox.metrics) calcPW() (in module vamtoolbox.metrics) calcVER() (in module vamtoolbox.metrics) calcVisibility() (vamtoolbox.projector.Projector2DParallel.Projector2DParallelPython method) calcZeroDoseSinogram() (vamtoolbox.geometry.ProjectionGeometry method) callback() (vamtoolbox.optimizer.BCLP.BCLPNorm method) centralFiniteDifference() (vamtoolbox.medium.MediumModel static method) checkConvergence() (vamtoolbox.optimizer.BCLP.BCLPNorm method) checkResponseTarget() (vamtoolbox.response.ResponseModel method) checkSinogramShape() (vamtoolbox.optimizer.BCLP.BCLPNorm method) clipToCircle() (in module vamtoolbox.util.data) coalesceRayEnergyToGrid() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) computeLoss() (vamtoolbox.optimizer.BCLP.BCLPNorm method) computeLossGradient() (vamtoolbox.optimizer.BCLP.BCLPNorm method)

constructCoordGrid() (vamtoolbox.geometry.Volume method) constructCoordVec() (vamtoolbox.geometry.Volume method) constructLines() (vamtoolbox.dlp.setup.AxisAlignment method) constructSiemen() (vamtoolbox.dlp.setup.Focus method) convertArray() (vamtoolbox.dlp.setup.SetupWindow method) convolveWithGaussKernelBP() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) convolveWithGaussKernelFP() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) createCubeCage() (in module vamtoolbox.projector.astra3Dabsorption) createGaussKernel() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) CursorFormatter (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) cursorString() (vamtoolbox.display.CursorFormatter method) (vamtoolbox.displaygrayscale.CursorFormatter method)

D

data (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage attribute) defaultKwargs() (in module vamtoolbox.geometry) delete() (vamtoolbox.voxelize.ShaderProgram method) deposit() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

depositEnergyOnAdjacentVoxel() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) depositEnergyUntilExit() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) dirty() (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage method) discreteSurfaceIntersectionCheck() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) discretize() (in module vamtoolbox.util.data)

E

EPSILON (in module vamtoolbox.voxelize) ErrorPlot (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) errorTolerancePlot() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale)

evaluateNormMetrics() (vamtoolbox.optimizer.BCLP.BCLPNorm method) EvolvingPlot (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) EvolvingPlotDemo (class in vamtoolbox.displaygrayscale) exitCheck() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) expressPositionInArrayIndices() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

F

fft (in module vamtoolbox.util.data) fftmodule (in module vamtoolbox.util.data) filterSinogram() (in module vamtoolbox.util.data) filterTarget() (in module vamtoolbox.util.data) filterTargetBCLP() (in module vamtoolbox.util.data) filterTargetOSMO() (in module vamtoolbox.util.data) Focus (class in vamtoolbox.dlp.setup) font (in module vamtoolbox.projector.gauss2D) forward() (vamtoolbox.projector.algebraicPropagation.AlgebraicPropagator method) (vamtoolbox.projector.Projector2DParallel.Projector2DParallelAstra method) (vamtoolbox.projector.Projector2DParallel.Projector2DParallelPython method) (vamtoolbox.projector.Projector2DParallelCUDA.Projector2DParallelCUDAAstra method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelAstra method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelPython method) (vamtoolbox.projector.Projector3DParallelCUDA.Projector3DParallelCUDAAstra method) (vamtoolbox.projector.Projector3DParallelCUDA.Projector3DParallelCUDATigre method) (vamtoolbox.projector.pyTorchAlgebraicPropagation.PyTorchAlgebraicPropagator method) (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method)

forwardProject() (vamtoolbox.projector.astra3Dabsorption.astra3Dabsorption method) (vamtoolbox.projector.astra3Dinclined.astra3Dinclined method) (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) (vamtoolbox.projector.tigre3D.tigre3D method) frame_index (vamtoolbox.dlp.players.SequencePlayer property)

G

gauss2D (class in vamtoolbox.projector.gauss2D) gauss3D (class in vamtoolbox.projector.gauss3D) gaussBP() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) gaussFP() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) generateOccSinogram() (vamtoolbox.projector.Projector2DParallel.Projector2DParallelPython method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelPython method) genVectorsAstra() (in module vamtoolbox.projector.genVectorsAstra) get_data() (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage method) get_uniform_location() (vamtoolbox.voxelize.ShaderProgram method)

getAdjacentVoxelIndicesAtLocation() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) getCircleMask() (in module vamtoolbox.geometry) getExpabs() (vamtoolbox.projector.astra3Dabsorption.astra3Dabsorption method) getInds() (in module vamtoolbox.geometry) getIterTime() (vamtoolbox.optimizer.PM.LogError method) getLoss() (vamtoolbox.optimizer.BCLP.BCLPNorm method) getLossGrad() (vamtoolbox.optimizer.BCLP.BCLPNorm method) getOccShadow() (vamtoolbox.projector.Projector2DParallel.Projector2DParallelPython method) (vamtoolbox.projector.Projector3DParallel.Projector3DParallelPython method) getPositionVectorsAtGridPoints() (vamtoolbox.medium.MediumModel method) gradientDescent() (vamtoolbox.optimizer.BCLP.BCLPNorm method)

H

histogramEqualization() (in module vamtoolbox.util.data)

HistogramPlot (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale)

I

ImageConfig (class in vamtoolbox.imagesequence) ImageSeq (class in vamtoolbox.imagesequence) imposeSinogramConstraints() (vamtoolbox.optimizer.BCLP.BCLPNorm method) IndexModel (class in vamtoolbox.medium) IndexTracker (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) integrate() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

integrateEnergyFromAdjacentVoxel() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) integrateEnergyUntilExit() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) inverseBackward() (vamtoolbox.projector.algebraicPropagation.AlgebraicPropagator method) (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method) ioff() (vamtoolbox.display.EvolvingPlot method) (vamtoolbox.displaygrayscale.EvolvingPlot method) (vamtoolbox.displaygrayscale.EvolvingPlotDemo method)

L

length_x (vamtoolbox.voxelize.Bounds attribute) length_y (vamtoolbox.voxelize.Bounds attribute) length_z (vamtoolbox.voxelize.Bounds attribute) linearCombinationRayEnergyToGrid() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

load() (in module vamtoolbox.resources) loadImageSeq() (in module vamtoolbox.imagesequence) loadVolume() (in module vamtoolbox.geometry) LogError (class in vamtoolbox.optimizer.PM) LogPerf (class in vamtoolbox.optimizer.BCLP)

M

MediumModel (class in vamtoolbox.medium) minimizeBCLP() (in module vamtoolbox.optimizer.BCLP) minimizeCAL() (in module vamtoolbox.optimizer.CAL) minimizeFBP() (in module vamtoolbox.optimizer.FBP) minimizeOSMO() (in module vamtoolbox.optimizer.OSMO) minimizePM() (in module vamtoolbox.optimizer.PM) module vamtoolbox vamtoolbox.display vamtoolbox.displaygrayscale vamtoolbox.dlp vamtoolbox.dlp.arrayimage vamtoolbox.dlp.players vamtoolbox.dlp.setup vamtoolbox.geometry vamtoolbox.imagesequence vamtoolbox.medium vamtoolbox.metrics vamtoolbox.optimize vamtoolbox.optimizer vamtoolbox.optimizer.BCLP vamtoolbox.optimizer.CAL vamtoolbox.optimizer.FBP vamtoolbox.optimizer.OSMO vamtoolbox.optimizer.PM vamtoolbox.projector vamtoolbox.projector.algebraicPropagation vamtoolbox.projector.astra3Dabsorption vamtoolbox.projector.astra3Dinclined vamtoolbox.projector.gauss2D vamtoolbox.projector.gauss3D vamtoolbox.projector.genVectorsAstra vamtoolbox.projector.Projector2DParallel vamtoolbox.projector.Projector2DParallelCUDA vamtoolbox.projector.Projector3DParallel vamtoolbox.projector.Projector3DParallelCUDA vamtoolbox.projector.pyTorchAlgebraicPropagation vamtoolbox.projector.pyTorchRayTrace vamtoolbox.projector.tigre3D vamtoolbox.projectorconstructor vamtoolbox.resources vamtoolbox.response vamtoolbox.staticresources vamtoolbox.util vamtoolbox.util.build_sparse_matrix vamtoolbox.util.data vamtoolbox.util.matlab vamtoolbox.util.matplotlib vamtoolbox.util.thresholding vamtoolbox.util.timing vamtoolbox.voxelize

MultiErrorPlot (class in vamtoolbox.displaygrayscale)

N

normalizePosition() (vamtoolbox.medium.MediumModel method)

O

on_draw() (vamtoolbox.dlp.players._Process method) (vamtoolbox.dlp.setup.SetupWindow method) on_key_press() (vamtoolbox.dlp.players._Process method) onAnimationEnd() (vamtoolbox.dlp.players.SequencePlayer method) onscroll() (vamtoolbox.display.BodiesIndexTracker method) (vamtoolbox.display.IndexTracker method) (vamtoolbox.displaygrayscale.BodiesIndexTracker method) (vamtoolbox.displaygrayscale.IndexTracker method)

OpenGLSlicer (class in vamtoolbox.voxelize) optimize() (in module vamtoolbox.optimize) Options (class in vamtoolbox.optimize) orthoMatrix() (in module vamtoolbox.voxelize)

P

pad_target_to_square() (in module vamtoolbox.voxelize) pauseSequence() (vamtoolbox.dlp.players.SequencePlayer method) pauseVideo() (vamtoolbox.dlp.players.VideoPlayer method) perAngleTrace() (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method) perRayTrace() (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method) perZTrace() (vamtoolbox.projector.pyTorchRayTrace.PyTorchRayTracingPropagator method) player() (in module vamtoolbox.dlp.players) plot_ray_init_position() (vamtoolbox.projector.pyTorchRayTrace.RayState method) plotAlpha() (vamtoolbox.medium.AttenuationModel method) plotAlphaAtPosition() (vamtoolbox.medium.AttenuationModel method) plotDmapDf() (vamtoolbox.response.ResponseModel method) plotGradNMag() (vamtoolbox.medium.IndexModel method) plotIndex() (vamtoolbox.medium.IndexModel method) plotIndexAtPosition() (vamtoolbox.medium.IndexModel method) plotMap() (vamtoolbox.response.ResponseModel method) plotMapInv() (vamtoolbox.response.ResponseModel method)

plotRandomlySampledAlpha() (vamtoolbox.medium.AttenuationModel method) plotRandomlySampledIndex() (vamtoolbox.medium.IndexModel method) prepareSlice() (vamtoolbox.voxelize.OpenGLSlicer method) preview() (in module vamtoolbox.dlp.players) (vamtoolbox.imagesequence.ImageSeq method) ProjectionGeometry (class in vamtoolbox.geometry) Projector2DParallelAstra (class in vamtoolbox.projector.Projector2DParallel) Projector2DParallelCUDAAstra (class in vamtoolbox.projector.Projector2DParallelCUDA) Projector2DParallelPython (class in vamtoolbox.projector.Projector2DParallel) Projector3DParallelAstra (class in vamtoolbox.projector.Projector3DParallel) Projector3DParallelCUDAAstra (class in vamtoolbox.projector.Projector3DParallelCUDA) Projector3DParallelCUDATigre (class in vamtoolbox.projector.Projector3DParallelCUDA) Projector3DParallelPython (class in vamtoolbox.projector.Projector3DParallel) projectorconstructor() (in module vamtoolbox.projectorconstructor) PyTorchAlgebraicPropagator (class in vamtoolbox.projector.pyTorchAlgebraicPropagation) PyTorchRayTracingPropagator (class in vamtoolbox.projector.pyTorchRayTrace)

Q

quit() (vamtoolbox.voxelize.OpenGLSlicer method)

R

RayState (class in vamtoolbox.projector.pyTorchRayTrace) RayState.RaySelector (class in vamtoolbox.projector.pyTorchRayTrace) RayTraceSolver (class in vamtoolbox.projector.pyTorchRayTrace) rebinFanBeam() (in module vamtoolbox.geometry) Reconstruction (class in vamtoolbox.geometry) record() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) recordEnergyOnAdjacentVoxel() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) recordEnergyUntilExit() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method)

recordIterTime() (vamtoolbox.optimizer.BCLP.LogPerf method) resetRaysIterateToInitial() (vamtoolbox.projector.pyTorchRayTrace.RayState method) reshape() (vamtoolbox.projector.pyTorchRayTrace.RayState method) ResponseModel (class in vamtoolbox.response) resumeSequence() (vamtoolbox.dlp.players.SequencePlayer method) resumeVideo() (vamtoolbox.dlp.players.VideoPlayer method) rotate() (in module vamtoolbox.voxelize) rotate_mesh() (in module vamtoolbox.voxelize) run() (vamtoolbox.dlp.players._Process method)

S

save() (vamtoolbox.display.HistogramPlot method) (vamtoolbox.displaygrayscale.HistogramPlot method) (vamtoolbox.geometry.Volume method) (vamtoolbox.imagesequence.ImageSeq method) (vamtoolbox.optimizer.BCLP.LogPerf method) saveAsImages() (vamtoolbox.imagesequence.ImageSeq method) saveAsVideo() (vamtoolbox.imagesequence.ImageSeq method) saveFigure() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale) saveMatData() (in module vamtoolbox.util.matlab) ScatteringModel (class in vamtoolbox.medium) segmentZ() (vamtoolbox.geometry.TargetGeometry method) (vamtoolbox.geometry.Volume method) selectCoord() (vamtoolbox.projector.pyTorchRayTrace.RayState method) selectInverse() (vamtoolbox.projector.pyTorchRayTrace.RayState method) SequencePlayer (class in vamtoolbox.dlp.players) setInt() (vamtoolbox.voxelize.ShaderProgram method) setMat4() (vamtoolbox.voxelize.ShaderProgram method) setupInterpCoords() (vamtoolbox.projector.gauss2D.gauss2D method) (vamtoolbox.projector.gauss3D.gauss3D method) setupRays() (vamtoolbox.projector.pyTorchRayTrace.RayState method)

setupRaysParallel() (vamtoolbox.projector.pyTorchRayTrace.RayState method) SetupWindow (class in vamtoolbox.dlp.setup) ShaderProgram (class in vamtoolbox.voxelize) show() (vamtoolbox.geometry.TargetGeometry method) (vamtoolbox.geometry.Volume method) (vamtoolbox.optimizer.BCLP.LogPerf method) showErrorPlot() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale) showHistogramPlot() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale) showSinoSlicer() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale) showVolumeSlicer() (in module vamtoolbox.display) (in module vamtoolbox.displaygrayscale) sigmoid() (in module vamtoolbox.util.data) Sinogram (class in vamtoolbox.geometry) slice() (vamtoolbox.voxelize.OpenGLSlicer method) SlicePlot (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) solveUntilExit() (vamtoolbox.projector.pyTorchRayTrace.RayTraceSolver method) startTiming() (vamtoolbox.optimizer.BCLP.LogPerf method)

T

target (in module vamtoolbox.projector.tigre3D) TargetGeometry (class in vamtoolbox.geometry) threshold() (in module vamtoolbox.util.thresholding) tigre3D (class in vamtoolbox.projector.tigre3D)

timing() (in module vamtoolbox.util.timing) translationMatrix() (in module vamtoolbox.voxelize) truncateCircle() (vamtoolbox.projector.astra3Dabsorption.astra3Dabsorption method) (vamtoolbox.projector.tigre3D.tigre3D method)

U

update() (vamtoolbox.display.BodiesIndexTracker method) (vamtoolbox.display.ErrorPlot method) (vamtoolbox.display.EvolvingPlot method) (vamtoolbox.display.HistogramPlot method) (vamtoolbox.display.IndexTracker method) (vamtoolbox.display.SlicePlot method) (vamtoolbox.displaygrayscale.BodiesIndexTracker method) (vamtoolbox.displaygrayscale.ErrorPlot method) (vamtoolbox.displaygrayscale.EvolvingPlot method) (vamtoolbox.displaygrayscale.EvolvingPlotDemo method) (vamtoolbox.displaygrayscale.HistogramPlot method) (vamtoolbox.displaygrayscale.IndexTracker method) (vamtoolbox.displaygrayscale.MultiErrorPlot method) (vamtoolbox.displaygrayscale.SlicePlot method) (vamtoolbox.dlp.setup.AxisAlignment method) (vamtoolbox.dlp.setup.SetupWindow method)

updateVariables() (vamtoolbox.optimizer.BCLP.BCLPNorm method) use() (vamtoolbox.voxelize.ShaderProgram method)

V

vamtoolbox module vamtoolbox.display module vamtoolbox.displaygrayscale module vamtoolbox.dlp module vamtoolbox.dlp.arrayimage module vamtoolbox.dlp.players module vamtoolbox.dlp.setup module vamtoolbox.geometry module vamtoolbox.imagesequence module vamtoolbox.medium module vamtoolbox.metrics module vamtoolbox.optimize module vamtoolbox.optimizer module vamtoolbox.optimizer.BCLP module vamtoolbox.optimizer.CAL module vamtoolbox.optimizer.FBP module vamtoolbox.optimizer.OSMO module vamtoolbox.optimizer.PM module vamtoolbox.projector module vamtoolbox.projector.algebraicPropagation module vamtoolbox.projector.astra3Dabsorption module vamtoolbox.projector.astra3Dinclined module vamtoolbox.projector.gauss2D module vamtoolbox.projector.gauss3D module

vamtoolbox.projector.genVectorsAstra module vamtoolbox.projector.Projector2DParallel module vamtoolbox.projector.Projector2DParallelCUDA module vamtoolbox.projector.Projector3DParallel module vamtoolbox.projector.Projector3DParallelCUDA module vamtoolbox.projector.pyTorchAlgebraicPropagation module vamtoolbox.projector.pyTorchRayTrace module vamtoolbox.projector.tigre3D module vamtoolbox.projectorconstructor module vamtoolbox.resources module vamtoolbox.response module vamtoolbox.staticresources module vamtoolbox.util module vamtoolbox.util.build_sparse_matrix module vamtoolbox.util.data module vamtoolbox.util.matlab module vamtoolbox.util.matplotlib module vamtoolbox.util.thresholding module vamtoolbox.util.timing module vamtoolbox.voxelize module VideoPlayer (class in vamtoolbox.dlp.players) view_new_array() (vamtoolbox.dlp.arrayimage.ArrayInterfaceImage method) Volume (class in vamtoolbox.geometry) VolumeSlicer (class in vamtoolbox.display) (class in vamtoolbox.displaygrayscale) vox (in module vamtoolbox.voxelize) voxelize() (vamtoolbox.voxelize.Voxelizer method) Voxelizer (class in vamtoolbox.voxelize) voxelizeTarget() (in module vamtoolbox.voxelize)

X

xmax (vamtoolbox.voxelize.Bounds attribute)

xmin (vamtoolbox.voxelize.Bounds attribute)

Y

ymax (vamtoolbox.voxelize.Bounds attribute)

ymin (vamtoolbox.voxelize.Bounds attribute)

Z

zmax (vamtoolbox.voxelize.Bounds attribute)

zmin (vamtoolbox.voxelize.Bounds attribute)